SRX9607922
GSM4950451: KO2-AP2A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2A

Cell type

Cell type Class
Epidermis
Cell type
A-375
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
Human Melanoma
cell line
A375
cell type
Melanoma cell line
treatment
CRISPR Knockout of TFAP2A
chip antibody
TFAP2A monoclonal antibody

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP using TFAP2A monoclonal antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
60862381
Reads aligned (%)
95.6
Duplicates removed (%)
13.7
Number of peaks
2003 (qval < 1E-05)

hg19

Number of total reads
60862381
Reads aligned (%)
94.7
Duplicates removed (%)
14.2
Number of peaks
804 (qval < 1E-05)

Base call quality data from DBCLS SRA