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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TFAP2A
wikigenes
PDBj
CellType: A-375
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX9607922
GSM4950451: KO2-AP2A; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TFAP2A
Cell type
Cell type Class
Epidermis
Cell type
A-375
Primary Tissue
Skin
Tissue Diagnosis
Melanoma
Attributes by original data submitter
Sample
source_name
Human Melanoma
cell line
A375
cell type
Melanoma cell line
treatment
CRISPR Knockout of TFAP2A
chip antibody
TFAP2A monoclonal antibody
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP using TFAP2A monoclonal antibody.
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
60862381
Reads aligned (%)
95.6
Duplicates removed (%)
13.7
Number of peaks
2003 (qval < 1E-05)
hg19
Number of total reads
60862381
Reads aligned (%)
94.7
Duplicates removed (%)
14.2
Number of peaks
804 (qval < 1E-05)
Base call quality data from
DBCLS SRA